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    LOC103492860 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 5 [ Cucumis melo (muskmelon) ]

    Gene ID: 103492860, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC103492860
    Gene description
    OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis melo
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC103492860 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 1 NC_066857.1 (32280357..32284861)
    101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546293.1 (4511697..4516185, complement)

    Chromosome 1 - NC_066857.1Genomic Context describing neighboring genes Neighboring gene ervatamin-B-like Neighboring gene monothiol glutaredoxin-S11 Neighboring gene glutaredoxin-C11 Neighboring gene monothiol glutaredoxin-S1-like Neighboring gene uncharacterized LOC103492858

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 5
    Names
    OTU domain-containing protein 6B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Genomic

    1. NC_066857.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

      Range
      32280357..32284861
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008453405.3 → XP_008451627.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 5 isoform X2

      See identical proteins and their annotated locations for XP_008451627.1

      UniProtKB/TrEMBL
      A0A1S3BRX4, A0A5D3D3S7
      Conserved Domains (3) summary
      COG5539
      Location:18 → 315
      COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
      pfam02338
      Location:176 → 313
      OTU; OTU-like cysteine protease
      cl17171
      Location:14 → 72
      PH-like; Pleckstrin homology-like domain

    2. XM_008453407.3 → XP_008451629.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 5 isoform X2

      See identical proteins and their annotated locations for XP_008451629.1

      UniProtKB/TrEMBL
      A0A1S3BRX4, A0A5D3D3S7
      Conserved Domains (3) summary
      COG5539
      Location:18 → 315
      COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
      pfam02338
      Location:176 → 313
      OTU; OTU-like cysteine protease
      cl17171
      Location:14 → 72
      PH-like; Pleckstrin homology-like domain

    3. XM_051087038.1 → XP_050942995.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 5 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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