U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC103492128 probable protein phosphatase 2C 5 [ Cucumis melo (muskmelon) ]

    Gene ID: 103492128, updated on 23-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC103492128
    Gene description
    probable protein phosphatase 2C 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis melo
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC103492128 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 2 NC_066858.1 (515001..518816, complement)
    101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546292.1 (443339..447217, complement)

    Chromosome 2 - NC_066858.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L39 Neighboring gene single-stranded DNA-binding protein, mitochondrial Neighboring gene kinesin-like protein KIN-14F Neighboring gene uncharacterized LOC103492130

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable protein phosphatase 2C 5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Genomic

    1. NC_066858.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

      Range
      515001..518816 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008452349.3 → XP_008450571.1  probable protein phosphatase 2C 5

      See identical proteins and their annotated locations for XP_008450571.1

      UniProtKB/TrEMBL
      A0A1S3BPJ4, A0A5A7UBD5
      Conserved Domains (1) summary
      cd00143
      Location:43 → 297
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...

    2. XM_008452351.3 → XP_008450573.1  probable protein phosphatase 2C 5

      See identical proteins and their annotated locations for XP_008450573.1

      UniProtKB/TrEMBL
      A0A1S3BPJ4, A0A5A7UBD5
      Conserved Domains (1) summary
      cd00143
      Location:43 → 297
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...

    3. XM_051081229.1 → XP_050937186.1  probable protein phosphatase 2C 5

      UniProtKB/TrEMBL
      A0A1S3BPJ4, A0A5A7UBD5
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases