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    LOC103486858 E3 ubiquitin-protein ligase At4g11680-like [ Cucumis melo (muskmelon) ]

    Gene ID: 103486858, updated on 17-Oct-2022

    Summary

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    Gene symbol
    LOC103486858
    Gene description
    E3 ubiquitin-protein ligase At4g11680-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis melo
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC103486858 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 4 NC_066860.1 (30477768..30481518)
    101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546278.1 (4419004..4422727, complement)

    Chromosome 4 - NC_066860.1Genomic Context describing neighboring genes Neighboring gene protein ROOT PRIMORDIUM DEFECTIVE 1 Neighboring gene aladin Neighboring gene alpha-L-arabinofuranosidase 1-like Neighboring gene probable protein S-acyltransferase 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase At4g11680-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Genomic

    1. NC_066860.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

      Range
      30477768..30481518
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008444986.3 → XP_008443208.1  E3 ubiquitin-protein ligase At4g11680-like

      UniProtKB/TrEMBL
      A0A1S3B880, A0A5D3DQ81
      Conserved Domains (1) summary
      cd16474
      Location:285 → 329
      RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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