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    LOC103483263 AT-rich interactive domain-containing protein 1-like [ Cucumis melo (muskmelon) ]

    Gene ID: 103483263, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC103483263
    Gene description
    AT-rich interactive domain-containing protein 1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis melo
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC103483263 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 6 NC_066862.1 (1292901..1296364)
    101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546273.1 (1043977..1047346)

    Chromosome 6 - NC_066862.1Genomic Context describing neighboring genes Neighboring gene calmodulin-binding receptor-like cytoplasmic kinase 2 Neighboring gene probable E3 ubiquitin-protein ligase RHB1A Neighboring gene ubiquitin-conjugating enzyme E2-23 kDa Neighboring gene U6 spliceosomal RNA Neighboring gene ATP-dependent helicase BRM

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AT-rich interactive domain-containing protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Genomic

    1. NC_066862.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

      Range
      1292901..1296364
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008439803.2 → XP_008438025.1  AT-rich interactive domain-containing protein 1-like

      See identical proteins and their annotated locations for XP_008438025.1

      UniProtKB/TrEMBL
      A0A1S3AVD4, A0A1S3AVH5
      Conserved Domains (1) summary
      pfam01388
      Location:6 → 57
      ARID; ARID/BRIGHT DNA binding domain

    2. XM_008439804.2 → XP_008438026.1  AT-rich interactive domain-containing protein 1-like

      See identical proteins and their annotated locations for XP_008438026.1

      UniProtKB/TrEMBL
      A0A1S3AVD4, A0A1S3AVH5
      Conserved Domains (1) summary
      pfam01388
      Location:6 → 57
      ARID; ARID/BRIGHT DNA binding domain
    Nucleotide Protein
    Heading Accession and Version

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