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    LOC103454894 transcription factor ICE1-like [ Malus domestica (apple) ]

    Gene ID: 103454894, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC103454894
    Gene description
    transcription factor ICE1-like
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Malus domestica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
    Also known as
    ICE1; BHLH11
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    Genomic context

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    See LOC103454894 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current ASM211411v1 (GCF_002114115.1) 14 NC_041802.1 (24168335..24170933, complement)
    101 previous assembly MalDomGD1.0 (GCF_000148765.1) 14 NC_024252.1 (20259641..20262239, complement)

    Chromosome 14 - NC_041802.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103415124 Neighboring gene auxin response factor 2-like Neighboring gene keratin-associated protein 5-4-like Neighboring gene ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor ICE1-like
    Names
    BHLH domain class transcription factor
    bHLH transcriptional factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001294038.1 → NP_001280967.1  transcription factor ICE1-like

      See identical proteins and their annotated locations for NP_001280967.1

      Status: PROVISIONAL

      Source sequence(s)
      HM122452
      UniProtKB/TrEMBL
      B2BF97, D9ZIN8
      Conserved Domains (2) summary
      cd04873
      Location:460 → 520
      ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
      smart00353
      Location:346 → 390
      HLH; helix loop helix domain

    RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM211411v1 Primary Assembly

    Genomic

    1. NC_041802.1 Reference ASM211411v1 Primary Assembly

      Range
      24168335..24170933 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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