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    LOC103339404 RING finger protein 219 [ Prunus mume (Japanese apricot) ]

    Gene ID: 103339404, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC103339404
    Gene description
    RING finger protein 219
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Prunus mume
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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    Genomic context

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    See LOC103339404 in Genome Data Viewer
    Location:
    chromosome: LG8
    Exon count:
    1
    Annotation release Status Assembly LG Location
    101 current P.mume_V1.0 (GCF_000346735.1) LG8 NC_024133.1 (6547517..6549853, complement)

    Linkage Group LG8 - NC_024133.1Genomic Context describing neighboring genes Neighboring gene protein trichome birefringence Neighboring gene homeobox-leucine zipper protein HOX11 Neighboring gene peroxidase A2-like Neighboring gene uncharacterized LOC103339406

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_024133.1 Chromosome LG8 Reference P.mume_V1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-like protein conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RING finger protein 219

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Prunus mume Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.mume_V1.0 Primary Assembly

    Genomic

    1. NC_024133.1 Reference P.mume_V1.0 Primary Assembly

      Range
      6547517..6549853 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008242691.2 → XP_008240913.1  RING finger protein 219

      Conserved Domains (2) summary
      PLN03208
      Location:115 → 217
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16745
      Location:129 → 173
      RING-HC_AtRMA_like; RING finger, HC subclass, found in Arabidopsis thaliana RING membrane-anchor proteins (AtRMAs) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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