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    L1CAM L1 cell adhesion molecule [ Chlorocebus sabaeus (green monkey) ]

    Gene ID: 103232804, updated on 11-Mar-2024

    Summary

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    Gene symbol
    L1CAM
    Gene description
    L1 cell adhesion molecule
    See related
    Ensembl:ENSCSAG00000006864
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chlorocebus sabaeus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
    Orthologs
    human mouse all
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    Genomic context

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    See L1CAM in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666065.1 (66154181..66179381, complement)
    100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) X NC_023671.1 (128285128..128309173, complement)

    NW_023666065.1Genomic Context describing neighboring genes Neighboring gene signal sequence receptor subunit 4 Neighboring gene PDZ domain containing 4 Neighboring gene collagen alpha-1(I) chain-like Neighboring gene Rho GTPase activating protein 4 Neighboring gene arginine vasopressin receptor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neural cell adhesion molecule L1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Vero_WHO_p1.0

    Genomic

    1. NW_023666065.1 Reference Vero_WHO_p1.0

      Range
      66154181..66179381 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007993104.2 → XP_007991295.1  neural cell adhesion molecule L1 isoform X5

      Conserved Domains (10) summary
      cd05731
      Location:255 → 325
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cd05733
      Location:48 → 125
      Ig6_L1-CAM_like; Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      cd05867
      Location:342 → 417
      Ig4_L1-CAM_like; Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      smart00408
      Location:527 → 589
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:244 → 324
      IG_like; Immunoglobulin like
      cd00063
      Location:607 → 704
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:514 → 603
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:819 → 902
      fn3; Fibronectin type III domain
      pfam13882
      Location:1139 → 1224
      Bravo_FIGEY; Bravo-like intracellular region
      cl11960
      Location:129 → 223
      Ig; Immunoglobulin domain

    2. XM_007993103.2 → XP_007991294.1  neural cell adhesion molecule L1 isoform X4

      Conserved Domains (10) summary
      cd05731
      Location:255 → 325
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cd05733
      Location:48 → 125
      Ig6_L1-CAM_like; Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      cd05867
      Location:342 → 417
      Ig4_L1-CAM_like; Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      smart00408
      Location:527 → 589
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:244 → 324
      IG_like; Immunoglobulin like
      cd00063
      Location:607 → 704
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:514 → 603
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:819 → 902
      fn3; Fibronectin type III domain
      pfam13882
      Location:1139 → 1228
      Bravo_FIGEY; Bravo-like intracellular region
      cl11960
      Location:129 → 223
      Ig; Immunoglobulin domain

    3. XM_007993102.2 → XP_007991293.1  neural cell adhesion molecule L1 isoform X3

      Conserved Domains (10) summary
      cd05731
      Location:260 → 330
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cd05733
      Location:53 → 130
      Ig6_L1-CAM_like; Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      cd05867
      Location:347 → 422
      Ig4_L1-CAM_like; Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      smart00408
      Location:532 → 594
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:249 → 329
      IG_like; Immunoglobulin like
      cd00063
      Location:612 → 709
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:519 → 608
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:824 → 907
      fn3; Fibronectin type III domain
      pfam13882
      Location:1144 → 1229
      Bravo_FIGEY; Bravo-like intracellular region
      cl11960
      Location:134 → 228
      Ig; Immunoglobulin domain

    4. XM_007993101.2 → XP_007991292.1  neural cell adhesion molecule L1 isoform X2

      UniProtKB/TrEMBL
      A0A0D9R3G8
      Related
      ENSCSAP00000003157.1
      Conserved Domains (7) summary
      cd00063
      Location:612 → 709
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:824 → 907
      fn3; Fibronectin type III domain
      pfam13882
      Location:1144 → 1229
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:140 → 143
      Ig; Ig strand A [structural motif]
      cd05867
      Location:334 → 422
      Ig4_L1-CAM_like; Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cd05876
      Location:248 → 330
      Ig3_L1-CAM; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:140 → 230
      Ig; Immunoglobulin domain

    5. XM_037988812.1 → XP_037844740.1  neural cell adhesion molecule L1 isoform X2

      UniProtKB/TrEMBL
      A0A0D9R3G8
      Conserved Domains (7) summary
      cd00063
      Location:612 → 709
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:824 → 907
      fn3; Fibronectin type III domain
      pfam13882
      Location:1144 → 1229
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:140 → 143
      Ig; Ig strand A [structural motif]
      cd05867
      Location:334 → 422
      Ig4_L1-CAM_like; Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cd05876
      Location:248 → 330
      Ig3_L1-CAM; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:140 → 230
      Ig; Immunoglobulin domain

    6. XM_007993100.2 → XP_007991291.1  neural cell adhesion molecule L1 isoform X1

      Conserved Domains (10) summary
      cd05731
      Location:327 → 397
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cd05733
      Location:120 → 197
      Ig6_L1-CAM_like; Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      cd05867
      Location:414 → 489
      Ig4_L1-CAM_like; Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      smart00408
      Location:599 → 661
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:316 → 396
      IG_like; Immunoglobulin like
      cd00063
      Location:679 → 776
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:586 → 675
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:891 → 974
      fn3; Fibronectin type III domain
      pfam13882
      Location:1211 → 1300
      Bravo_FIGEY; Bravo-like intracellular region
      cl11960
      Location:201 → 295
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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