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    LOC103146838 transcriptional repressor scratch 1-like [ Poecilia formosa (Amazon molly) ]

    Gene ID: 103146838, updated on 28-Dec-2023

    Summary

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    Gene symbol
    LOC103146838
    Gene description
    transcriptional repressor scratch 1-like
    See related
    Ensembl:ENSPFOG00000005616
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Poecilia formosa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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    Genomic context

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    See LOC103146838 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800108.1 (856843..867186, complement)

    NW_006800108.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107837714 Neighboring gene uncharacterized LOC107837720 Neighboring gene uncharacterized LOC107837713 Neighboring gene solute carrier family 39 member 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006800108.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcriptional repressor scratch 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Poecilia_formosa-5.1.2

    Genomic

    1. NW_006800108.1 Reference Poecilia_formosa-5.1.2

      Range
      856843..867186 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007564893.2 → XP_007564955.1  transcriptional repressor scratch 1-like

      UniProtKB/TrEMBL
      A0A087XI97, A0A096LRR7
      Related
      ENSPFOP00000005500.2, ENSPFOT00000005509.2
      Conserved Domains (4) summary
      sd00017
      Location:207 → 227
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:181 → 198
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:235 → 255
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:220 → 243
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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