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    capn3b calpain 3b [ Poecilia formosa (Amazon molly) ]

    Gene ID: 103133981, updated on 11-Mar-2024

    Summary

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    Gene symbol
    capn3b
    Gene description
    calpain 3b
    See related
    Ensembl:ENSPFOG00000019159
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Poecilia formosa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
    Orthologs
    zebrafish all
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    Genomic context

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    See capn3b in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006799940.1 (4111915..4122315)

    NW_006799940.1Genomic Context describing neighboring genes Neighboring gene macoilin-1-like Neighboring gene nuclear receptor binding protein 1 Neighboring gene zinc finger protein 106b Neighboring gene churchill domain containing 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006799940.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium-dependent cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calpain-3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Poecilia_formosa-5.1.2

    Genomic

    1. NW_006799940.1 Reference Poecilia_formosa-5.1.2

      Range
      4111915..4122315
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007546023.2 → XP_007546085.1  calpain-3-like isoform X1

      UniProtKB/TrEMBL
      A0A087YMN7
      Related
      ENSPFOP00000019290.2, ENSPFOT00000019312.1
      Conserved Domains (5) summary
      COG5126
      Location:673 → 761
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
      cd00051
      Location:646 → 700
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam00648
      Location:79 → 373
      Peptidase_C2; Calpain family cysteine protease
      pfam01067
      Location:387 → 537
      Calpain_III; Calpain large subunit, domain III
      pfam16648
      Location:541 → 581
      Calpain_u2; Unstructured region on Calpain-3

    2. XM_016668781.1 → XP_016524267.1  calpain-3-like isoform X2

      UniProtKB/TrEMBL
      A0A087YMN7
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases