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    slc6a4a solute carrier family 6 member 4a [ Lepisosteus oculatus (spotted gar) ]

    Gene ID: 102695889, updated on 23-Oct-2024

    Summary

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    Gene symbol
    slc6a4a
    Gene description
    solute carrier family 6 member 4a
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lepisosteus oculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
    Also known as
    slc6a4
    Orthologs
    zebrafish all
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    Genomic context

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    See slc6a4a in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 26 NC_090721.1 (10699336..10722472, complement)
    101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG22 NC_023200.1 (10501135..10520318, complement)

    Chromosome 26 - NC_090721.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107079929 Neighboring gene nuclear speckle splicing regulatory protein 1 Neighboring gene bleomycin hydrolase Neighboring gene uncharacterized LOC107079915 Neighboring gene small nucleolar RNA SNORD65

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serotonin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serotonin:sodium:chloride symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in serotonin uptake IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sodium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    solute carrier family 6 member 4a
    Names
    solute carrier family 6 member 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLepOcu1.hap2

    Genomic

    1. NC_090721.1 Reference fLepOcu1.hap2

      Range
      10699336..10722472 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_069184409.1 → XP_069040510.1  solute carrier family 6 member 4a

    2. XM_069184408.1 → XP_069040509.1  solute carrier family 6 member 4a

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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