U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC102678029 collagen alpha chain CG42342-like [ Apis dorsata (giant honeybee) ]

    Gene ID: 102678029, updated on 14-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC102678029
    Gene description
    collagen alpha chain CG42342-like
    See related
    EnsemblRapid:LOC102678029
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Apis dorsata
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC102678029 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current Apis dorsata 1.3 (GCF_000469605.1) Unplaced Scaffold NW_006263515.1 (393..25586, complement)

    NW_006263515.1Genomic Context describing neighboring genes Neighboring gene protein mesh-like Neighboring gene uncharacterized LOC116185638

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_006263515 Unplaced Scaffold Reference Apis dorsata 1.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heparin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    collagen alpha chain CG42342-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Apis dorsata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Apis dorsata 1.3

    Genomic

    1. NW_006263515.1 Reference Apis dorsata 1.3

      Range
      393..25586 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031510514.1 → XP_031366374.1  collagen alpha chain CG42342-like isoform X2

      Related
      XP_031366374.1, XM_031510514.1
      Conserved Domains (1) summary
      pfam01391
      Location:145 → 193
      Collagen; Collagen triple helix repeat (20 copies)

    2. XM_031510513.1 → XP_031366373.1  collagen alpha chain CG42342-like isoform X1

      Related
      XP_031366373.1, XM_031510513.1
      Conserved Domains (1) summary
      pfam01391
      Location:162 → 210
      Collagen; Collagen triple helix repeat (20 copies)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases