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    LOC102591806 protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [ Solanum tuberosum (potato) ]

    Gene ID: 102591806, updated on 2-Nov-2023

    Summary

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    Gene symbol
    LOC102591806
    Gene description
    protein SENSITIVE TO PROTON RHIZOTOXICITY 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum tuberosum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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    Genomic context

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    See LOC102591806 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239056.1 (1087375..1090336)

    NW_006239056.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107061298 Neighboring gene 3-dehydroquinate synthase homolog Neighboring gene FHA domain-containing protein PS1 Neighboring gene scarecrow-like protein 21

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006239056.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in response to acidic pH IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to aluminum ion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SENSITIVE TO PROTON RHIZOTOXICITY 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SolTub_3.0 Primary Assembly

    Genomic

    1. NW_006239056.1 Reference SolTub_3.0 Primary Assembly

      Range
      1087375..1090336
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006351101.2 → XP_006351163.1  protein SENSITIVE TO PROTON RHIZOTOXICITY 1

      UniProtKB/TrEMBL
      M1AJ35
      Conserved Domains (2) summary
      sd00017
      Location:263 → 283
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:261 → 283
      zf-C2H2; Zinc finger, C2H2 type
    Nucleotide Protein
    Heading Accession and Version

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