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    MTMR4 myotubularin related protein 4 [ Alligator sinensis (Chinese alligator) ]

    Gene ID: 102372670, updated on 10-Mar-2024

    Summary

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    Gene symbol
    MTMR4
    Gene description
    myotubularin related protein 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator sinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Orthologs
    human mouse all
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    Genomic context

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    See MTMR4 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842661.1 (39153..119253, complement)

    NW_005842661.1Genomic Context describing neighboring genes Neighboring gene heat shock factor protein 5-like Neighboring gene caspase-1-like Neighboring gene abhydrolase domain containing 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005842661 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein phosphatase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of autophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myotubularin-related protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM45574v1 Primary Assembly

    Genomic

    1. NW_005842661.1 Reference ASM45574v1 Primary Assembly

      Range
      39153..119253 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025215674.1 → XP_025071459.1  myotubularin-related protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A3Q0HHN4

    2. XM_006033780.3 → XP_006033842.1  myotubularin-related protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A1U7S2Y9
      Conserved Domains (3) summary
      cd13342
      Location:24 → 137
      PH-GRAM_MTMR4; Myotubularian (MTM) related 4 protein (MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
      cd15733
      Location:1072 → 1131
      FYVE_MTMR4; FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins
      pfam06602
      Location:160 → 522
      Myotub-related; Myotubularin-like phosphatase domain

    3. XM_025215673.1 → XP_025071458.1  myotubularin-related protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A1U7S2Y9
      Conserved Domains (3) summary
      cd13342
      Location:24 → 137
      PH-GRAM_MTMR4; Myotubularian (MTM) related 4 protein (MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
      cd15733
      Location:1072 → 1131
      FYVE_MTMR4; FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins
      pfam06602
      Location:160 → 522
      Myotub-related; Myotubularin-like phosphatase domain

    4. XM_025215675.1 → XP_025071460.1  myotubularin-related protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A3Q0HLN6
    Nucleotide Protein
    Heading Accession and Version

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