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    OLIG2 oligodendrocyte lineage transcription factor 2 [ Latimeria chalumnae (coelacanth) ]

    Gene ID: 102367538, updated on 2-May-2024

    Summary

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    Gene symbol
    OLIG2
    Gene description
    oligodendrocyte lineage transcription factor 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Latimeria chalumnae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
    Orthologs
    human zebrafish all
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    Genomic context

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    See OLIG2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 4 NC_088142.1 (59479363..59480172, complement)
    101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005820952.1 (169955..170764, complement)

    Chromosome 4 - NC_088142.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135356522 Neighboring gene interferon alpha/beta receptor 2-like Neighboring gene uncharacterized LOC102366853 Neighboring gene sodium/potassium-transporting ATPase subunit alpha-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables E-box binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in myelination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in oligodendrocyte cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in oligodendrocyte differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sensory organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oligodendrocyte transcription factor 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLatCha1.pri

    Genomic

    1. NC_088142.1 Reference fLatCha1.pri

      Range
      59479363..59480172 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006009058.1 → XP_006009120.1  oligodendrocyte transcription factor 2

      UniProtKB/TrEMBL
      H3A960
      Conserved Domains (1) summary
      smart00353
      Location:87 → 141
      HLH; helix loop helix domain
    Nucleotide Protein
    Heading Accession and Version

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