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    INPP5D inositol polyphosphate-5-phosphatase D [ Latimeria chalumnae (coelacanth) ]

    Gene ID: 102365596, updated on 2-May-2024

    Summary

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    Gene symbol
    INPP5D
    Gene description
    inositol polyphosphate-5-phosphatase D
    See related
    Ensembl:ENSLACG00000013057
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Latimeria chalumnae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
    Orthologs
    human zebrafish all
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    Genomic context

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    See INPP5D in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 8 NC_088146.1 (43695115..43802575, complement)
    101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819892.1 (775441..882843)

    Chromosome 8 - NC_088146.1Genomic Context describing neighboring genes Neighboring gene small Cajal body-specific RNA 6 Neighboring gene ATG16 autophagy related 16-like 1 (S. cerevisiae) Neighboring gene small Cajal body-specific RNA 6 Neighboring gene sialidase-2 Neighboring gene integrin-linked kinase-associated serine/threonine phosphatase Neighboring gene uncharacterized LOC102362604

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of bone resorption IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of neutrophil differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of B cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1
    Names
    inositol polyphosphate-5-phosphatase, 145kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLatCha1.pri

    Genomic

    1. NC_088146.1 Reference fLatCha1.pri

      Range
      43695115..43802575 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_064563004.1 → XP_064419074.1  phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1

    Nucleotide Protein
    Heading Accession and Version

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