U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    GTF2A2 general transcription factor IIA, 2 [ Latimeria chalumnae (coelacanth) ]

    Gene ID: 102356887, updated on 26-Apr-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    GTF2A2
    Gene description
    general transcription factor IIA, 2
    See related
    Ensembl:ENSLACG00000018037
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Latimeria chalumnae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See GTF2A2 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 13 NC_088151.1 (22118015..22127041)
    101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819026.1 (2642310..2649139)

    Chromosome 13 - NC_088151.1Genomic Context describing neighboring genes Neighboring gene forkhead box B1a Neighboring gene 5S ribosomal RNA Neighboring gene BCL2 interacting protein 2 Neighboring gene proprotein convertase subtilisin/kexin type 5 Neighboring gene glucosaminyl (N-acetyl) transferase 3, mucin type

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables TBP-class protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA polymerase II preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIIA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription initiation factor IIA subunit 2
    Names
    general transcription factor IIA subunit 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLatCha1.pri

    Genomic

    1. NC_088151.1 Reference fLatCha1.pri

      Range
      22118015..22127041
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005987740.3 → XP_005987802.1  transcription initiation factor IIA subunit 2

      UniProtKB/TrEMBL
      H3BF53
      Related
      ENSLACP00000020524.2
      Conserved Domains (3) summary
      COG5123
      Location:3 → 103
      TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]
      pfam02268
      Location:3 → 49
      TFIIA_gamma_N; Transcription initiation factor IIA, gamma subunit, helical domain
      pfam02751
      Location:52 → 100
      TFIIA_gamma_C; Transcription initiation factor IIA, gamma subunit
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.