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    LOC102356078 thyroid hormone receptor-associated protein 3 [ Latimeria chalumnae (coelacanth) ]

    Gene ID: 102356078, updated on 4-May-2024

    Summary

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    Gene symbol
    LOC102356078
    Gene description
    thyroid hormone receptor-associated protein 3
    See related
    Ensembl:ENSLACG00000018229
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Latimeria chalumnae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
    Also known as
    THRAP3
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    Genomic context

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    See LOC102356078 in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 27 NC_088165.1 (13807533..13888088)
    101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819037.1 (2922027..2998114)

    Chromosome 27 - NC_088165.1Genomic Context describing neighboring genes Neighboring gene MAP7 domain containing 1a Neighboring gene uncharacterized LOC135352973 Neighboring gene uncharacterized LOC102355888 Neighboring gene 5S ribosomal RNA Neighboring gene SH3 domain containing 21 Neighboring gene eva-1 homolog Ba (C. elegans)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of exon-exon junction complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of mediator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thyroid hormone receptor-associated protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLatCha1.pri

    Genomic

    1. NC_088165.1 Reference fLatCha1.pri

      Range
      13807533..13888088
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014497327.2 → XP_014352813.1  thyroid hormone receptor-associated protein 3 isoform X1

      UniProtKB/TrEMBL
      H3BFT0
      Related
      ENSLACP00000020751.1

    2. XM_014497320.2 → XP_014352806.1  thyroid hormone receptor-associated protein 3 isoform X1

      UniProtKB/TrEMBL
      H3BFT0

    3. XM_014497333.2 → XP_014352819.1  thyroid hormone receptor-associated protein 3 isoform X2

    RNA

    1. XR_001356189.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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