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    LYPD6 LY6/PLAUR domain containing 6 [ Latimeria chalumnae (coelacanth) ]

    Gene ID: 102351087, updated on 29-Apr-2024

    Summary

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    Gene symbol
    LYPD6
    Gene description
    LY6/PLAUR domain containing 6
    See related
    Ensembl:ENSLACG00000008705
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Latimeria chalumnae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
    Orthologs
    human zebrafish all
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    Genomic context

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    See LYPD6 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 9 NC_088147.1 (71054925..71161290, complement)
    101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819981.1 (364944..470260)

    Chromosome 9 - NC_088147.1Genomic Context describing neighboring genes Neighboring gene Rho family GTPase 3b Neighboring gene uncharacterized LOC135359038 Neighboring gene metabolism of cobalamin associated Db Neighboring gene uncharacterized LOC106704969 Neighboring gene uncharacterized LOC135359078 Neighboring gene LY6/PLAUR domain containing 6B Neighboring gene kinesin family member 5C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acetylcholine receptor inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ly6/PLAUR domain-containing protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLatCha1.pri

    Genomic

    1. NC_088147.1 Reference fLatCha1.pri

      Range
      71054925..71161290 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006003802.3 → XP_006003864.1  ly6/PLAUR domain-containing protein 6

      See identical proteins and their annotated locations for XP_006003864.1

      UniProtKB/TrEMBL
      H3AJQ0
      Related
      ENSLACP00000009872.1
      Conserved Domains (1) summary
      pfam16975
      Location:40 → 158
      UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6

    2. XM_014493167.2 → XP_014348653.1  ly6/PLAUR domain-containing protein 6

      UniProtKB/TrEMBL
      H3AJQ0
      Conserved Domains (1) summary
      pfam16975
      Location:40 → 158
      UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
    Nucleotide Protein
    Heading Accession and Version

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