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    fastkd1 FAST kinase domains 1 [ Pundamilia nyererei ]

    Gene ID: 102202729, updated on 10-Mar-2024

    Summary

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    Gene symbol
    fastkd1
    Gene description
    FAST kinase domains 1
    See related
    Ensembl:ENSPNYG00000006151
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pundamilia nyererei
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
    Orthologs
    human zebrafish all
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    Genomic context

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    See fastkd1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187410.1 (4098534..4103516, complement)

    NW_005187410.1Genomic Context describing neighboring genes Neighboring gene Bardet-Biedl syndrome 5 Neighboring gene kelch-like family member 41a Neighboring gene peptidylprolyl isomerase G (cyclophilin G) Neighboring gene cilia and flagella associated protein 210

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005187410.1 Unplaced Scaffold Reference PunNye1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mitochondrial mRNA stability IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribonucleoprotein granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    FAST kinase domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PunNye1.0

    Genomic

    1. NW_005187410.1 Reference PunNye1.0

      Range
      4098534..4103516 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005723450.1 → XP_005723507.1  FAST kinase domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005723507.1

      UniProtKB/TrEMBL
      A0A3B4FBZ2
      Conserved Domains (3) summary
      smart00952
      Location:766 → 825
      RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
      pfam06743
      Location:561 → 626
      FAST_1; FAST kinase-like protein, subdomain 1
      pfam08368
      Location:646 → 727
      FAST_2; FAST kinase-like protein, subdomain 2

    2. XM_005723452.1 → XP_005723509.1  FAST kinase domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A9Y3QLV7
      Conserved Domains (3) summary
      smart00952
      Location:737 → 796
      RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
      pfam06743
      Location:532 → 597
      FAST_1; FAST kinase-like protein, subdomain 1
      pfam08368
      Location:617 → 698
      FAST_2; FAST kinase-like protein, subdomain 2

    3. XM_005723449.1 → XP_005723506.1  FAST kinase domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005723506.1

      UniProtKB/TrEMBL
      A0A3B4FBZ2
      Related
      ENSPNYP00000008095.1, ENSPNYT00000008293.1
      Conserved Domains (3) summary
      smart00952
      Location:766 → 825
      RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
      pfam06743
      Location:561 → 626
      FAST_1; FAST kinase-like protein, subdomain 1
      pfam08368
      Location:646 → 727
      FAST_2; FAST kinase-like protein, subdomain 2

    4. XM_005723451.2 → XP_005723508.1  FAST kinase domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005723508.1

      UniProtKB/TrEMBL
      A0A3B4FBZ2
      Conserved Domains (3) summary
      smart00952
      Location:766 → 825
      RAP; This domain is found in various eukaryotic species, particularly in apicomplexans
      pfam06743
      Location:561 → 626
      FAST_1; FAST kinase-like protein, subdomain 1
      pfam08368
      Location:646 → 727
      FAST_2; FAST kinase-like protein, subdomain 2
    Nucleotide Protein
    Heading Accession and Version

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