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    LOC102095164 very long chain fatty acid elongase 4 [ Columba livia (rock pigeon) ]

    Gene ID: 102095164, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LOC102095164
    Gene description
    very long chain fatty acid elongase 4
    Locus tag
    A306_10012
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Columba livia
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
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    Genomic context

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    See LOC102095164 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 1 NC_088602.1 (143315309..143347062, complement)
    102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973623.1 (2676791..2689421, complement)

    Chromosome 1 - NC_088602.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135575694 Neighboring gene potassium voltage-gated channel subfamily A member 5 Neighboring gene metal transporter CNNM4-like Neighboring gene potassium voltage-gated channel subfamily A member 1 Neighboring gene potassium voltage-gated channel subfamily A member 6-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables fatty acid elongase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid elongation, monounsaturated fatty acid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in fatty acid elongation, polyunsaturated fatty acid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in fatty acid elongation, saturated fatty acid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sphingolipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in very long-chain fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    very long chain fatty acid elongase 4
    Names
    elongation of very long chain fatty acids protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bColLiv1.pat.W.v2

    Genomic

    1. NC_088602.1 Reference bColLiv1.pat.W.v2

      Range
      143315309..143347062 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_065034361.1 → XP_064890433.1  very long chain fatty acid elongase 4 isoform X1

    2. XM_065034371.1 → XP_064890443.1  very long chain fatty acid elongase 4 isoform X2

    3. XM_065034377.1 → XP_064890449.1  very long chain fatty acid elongase 4 isoform X3

    RNA

    1. XR_010466944.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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