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    Gtpbp3 GTP binding protein 3, mitochondrial [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

    Gene ID: 101967881, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Gtpbp3
    Gene description
    GTP binding protein 3, mitochondrial
    Locus tag
    H1C71_006966
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ictidomys tridecemlineatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
    Orthologs
    human mouse all
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    Genomic context

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    See Gtpbp3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405118.1 (203978805..203982556, complement)
    102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936596.1 (3527903..3532931, complement)

    NW_024405118.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 194 Neighboring gene plasmalemma vesicle associated protein Neighboring gene anoctamin 8 Neighboring gene DET1 and DDB1 associated 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tRNA wobble uridine modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA modification GTPase GTPBP3, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HiC_Itri_2 Primary Assembly

    Genomic

    1. NW_024405118.1 Reference HiC_Itri_2 Primary Assembly

      Range
      203978805..203982556 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005333014.4 → XP_005333071.1  tRNA modification GTPase GTPBP3, mitochondrial isoform X2

      UniProtKB/TrEMBL
      I3M7P4
      Conserved Domains (1) summary
      PRK05291
      Location:35 → 487
      trmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE

    2. XM_040290297.1 → XP_040146231.1  tRNA modification GTPase GTPBP3, mitochondrial isoform X1

      Conserved Domains (1) summary
      PRK05291
      Location:103 → 555
      trmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
    Nucleotide Protein
    Heading Accession and Version

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