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    LOC101964256 T-cell surface glycoprotein CD1a-like [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

    Gene ID: 101964256, updated on 16-Nov-2023

    Summary

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    Gene symbol
    LOC101964256
    Gene description
    T-cell surface glycoprotein CD1a-like
    Locus tag
    H1C71_031594
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ictidomys tridecemlineatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
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    Genomic context

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    See LOC101964256 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405058.1 (4323833..4329737)
    102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936847.1 (246357..251671, complement)

    NW_024405058.1Genomic Context describing neighboring genes Neighboring gene T-cell surface glycoprotein CD1a-like Neighboring gene T-cell surface glycoprotein CD1a-like Neighboring gene T-cell surface glycoprotein CD1a-like Neighboring gene T-cell surface glycoprotein CD1a-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables endogenous lipid antigen binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables exogenous lipid antigen binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipopeptide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in antigen processing and presentation, endogenous lipid antigen via MHC class Ib IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in antigen processing and presentation, exogenous lipid antigen via MHC class Ib IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of T cell mediated cytotoxicity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-cell surface glycoprotein CD1a-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HiC_Itri_2 Primary Assembly

    Genomic

    1. NW_024405058.1 Reference HiC_Itri_2 Primary Assembly

      Range
      4323833..4329737
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005341189.2 → XP_005341246.2  T-cell surface glycoprotein CD1a-like

      Conserved Domains (1) summary
      smart00407
      Location:237 → 301
      IGc1; Immunoglobulin C-Type
    Nucleotide Protein
    Heading Accession and Version

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