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    LINC02125 long intergenic non-protein coding RNA 2125 [ Homo sapiens (human) ]

    Gene ID: 101928203, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC02125provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2125provided by HGNC
    Primary source
    HGNC:HGNC:52982
    See related
    Ensembl:ENSG00000250514 AllianceGenome:HGNC:52982
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.2) See more
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    Genomic context

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    See LINC02125 in Genome Data Viewer
    Location:
    16q23.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (76634998..76658478)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (82691173..82714658)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (76668895..76692375)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ribosomal protein L18 pseudogene 13 Neighboring gene RN7SK pseudogene 233 Neighboring gene contactin associated protein family member 4 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_44671 Neighboring gene NANOG hESC enhancer GRCh37_chr16:76716883-76717434 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_44716 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr16:76749983-76751182 Neighboring gene uncharacterized LOC105376774 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:76838358-76839557 Neighboring gene microRNA 4719

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110934.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK057218
      Related
      ENST00000512279.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      76634998..76658478
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      82691173..82714658
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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