U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    zfyve9b zinc finger, FYVE domain containing 9b [ Danio rerio (zebrafish) ]

    Gene ID: 101882992, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    zfyve9bprovided by ZNC
    Official Full Name
    zinc finger, FYVE domain containing 9bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-110825-2
    See related
    Ensembl:ENSDARG00000100764 AllianceGenome:ZFIN:ZDB-GENE-110825-2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zfyve9
    Summary
    Predicted to enable metal ion binding activity. Orthologous to human ZFYVE9 (zinc finger FYVE-type containing 9). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See zfyve9b in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (13058617..13090561)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (13000949..13030785)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene prostaglandin F receptor (FP) Neighboring gene basic transcription factor 3-like 4 Neighboring gene ELOVL fatty acid elongase 1b Neighboring gene MOB kinase activator 3C

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Zfyve9a regulates the proliferation of hepatic cells during zebrafish embryogenesis. Liu N, et al. Int J Dev Biol, 2013. PMID 24307302
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger FYVE domain-containing protein 9
    Names
    zinc finger, FYVE domain containing 9

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      13058617..13090561
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009305915.4 → XP_009304190.1  zinc finger FYVE domain-containing protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8M3BDK8
      Related
      ENSDARP00000139522.2, ENSDART00000161532.3
      Conserved Domains (2) summary
      cd15729
      Location:128 → 195
      FYVE_endofin; FYVE domain found in endofin and similar proteins
      pfam11979
      Location:413 → 765
      DUF3480; Domain of unknown function (DUF3480)

    2. XM_068224299.1 → XP_068080400.1  zinc finger FYVE domain-containing protein 9 isoform X2

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials