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    Sgce sarcoglycan epsilon [ Mesocricetus auratus (golden hamster) ]

    Gene ID: 101827184, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Sgce
    Gene description
    sarcoglycan epsilon
    See related
    EnsemblRapid:ENSMAUG00000022202
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mesocricetus auratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
    Orthologs
    human mouse all
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    Genomic context

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    See Sgce in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429200.1 (34615238..34684664)
    102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801743.1 (1229298..1298822, complement)

    NW_024429200.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase MARCHF2-like Neighboring gene paternally expressed 10 Neighboring gene CAS1 domain containing 1 Neighboring gene collagen type I alpha 2 chain

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    epsilon-sarcoglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BCM_Maur_2.0 Primary Assembly

    Genomic

    1. NW_024429200.1 Reference BCM_Maur_2.0 Primary Assembly

      Range
      34615238..34684664
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021234607.2 → XP_021090266.1  epsilon-sarcoglycan isoform X8

      UniProtKB/TrEMBL
      A0A3Q0DBQ9
      Conserved Domains (1) summary
      pfam05510
      Location:73 → 445
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    2. XM_013122657.3 → XP_012978111.1  epsilon-sarcoglycan isoform X1

      UniProtKB/TrEMBL
      A0A1U8CFB2
      Related
      ENSMAUP00000060428.1, ENSMAUT00000060465.1
      Conserved Domains (1) summary
      pfam05510
      Location:73 → 455
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    3. XM_013122660.3 → XP_012978114.1  epsilon-sarcoglycan isoform X6

      UniProtKB/TrEMBL
      A0A1U8CRS0
      Related
      ENSMAUP00000059091.1, ENSMAUT00000077106.1
      Conserved Domains (1) summary
      pfam05510
      Location:73 → 454
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    4. XM_040728584.1 → XP_040584518.1  epsilon-sarcoglycan isoform X3

      Conserved Domains (1) summary
      pfam05510
      Location:73 → 437
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    5. XM_005082902.4 → XP_005082959.1  epsilon-sarcoglycan isoform X4

      UniProtKB/TrEMBL
      A0A1U7R071
      Related
      ENSMAUP00000025794.1, ENSMAUT00000029818.2
      Conserved Domains (1) summary
      pfam05510
      Location:73 → 455
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    6. XM_013122659.3 → XP_012978113.1  epsilon-sarcoglycan isoform X5

      UniProtKB/TrEMBL
      A0A1U8CQQ4
      Related
      ENSMAUP00000025795.2, ENSMAUT00000029819.2
      Conserved Domains (1) summary
      pfam05510
      Location:34 → 419
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    7. XM_005082904.4 → XP_005082961.1  epsilon-sarcoglycan isoform X7

      UniProtKB/TrEMBL
      A0A1U7QNU8
      Conserved Domains (1) summary
      pfam05510
      Location:34 → 410
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    8. XM_021234608.2 → XP_021090267.1  epsilon-sarcoglycan isoform X9

      UniProtKB/TrEMBL
      A0A3Q0DAV9
      Related
      ENSMAUP00000045745.1, ENSMAUT00000058011.1
      Conserved Domains (1) summary
      pfam05510
      Location:34 → 418
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    9. XM_040728585.1 → XP_040584519.1  epsilon-sarcoglycan isoform X10

      Conserved Domains (1) summary
      pfam05510
      Location:34 → 409
      Sarcoglycan_2; Sarcoglycan alpha/epsilon

    10. XM_013122658.3 → XP_012978112.1  epsilon-sarcoglycan isoform X2

      UniProtKB/TrEMBL
      A0A1U8CFC0
      Conserved Domains (1) summary
      pfam05510
      Location:73 → 446
      Sarcoglycan_2; Sarcoglycan alpha/epsilon
    Nucleotide Protein
    Heading Accession and Version

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