U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC101759857 uncharacterized LOC101759857 [ Setaria italica (foxtail millet) ]

    Gene ID: 101759857, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC101759857
    Gene description
    uncharacterized LOC101759857
    Locus tag
    SETIT_024546mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Setaria italica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC101759857 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current Setaria_italica_v2.0 (GCF_000263155.2) III NC_028452.1 (7629904..7631664)
    101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675963.1 (7629554..7630929)

    Chromosome III - NC_028452.1Genomic Context describing neighboring genes Neighboring gene NDR1/HIN1-like protein 6 Neighboring gene probable beta-1,3-galactosyltransferase 12 Neighboring gene thioredoxin-like 2, chloroplastic Neighboring gene uncharacterized LOC101762945

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC101759857

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Setaria_italica_v2.0 Primary Assembly

    Genomic

    1. NC_028452.1 Reference Setaria_italica_v2.0 Primary Assembly

      Range
      7629904..7631664
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022825203.1 → XP_022680938.1  uncharacterized protein LOC101759857

      UniProtKB/TrEMBL
      A0A368QEH9
      Conserved Domains (1) summary
      cd00083
      Location:165 → 217
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.