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    Casc3 CASC3 exon junction complex subunit [ Heterocephalus glaber (naked mole-rat) ]

    Gene ID: 101725973, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Casc3
    Gene description
    CASC3 exon junction complex subunit
    See related
    Ensembl:ENSHGLG00000012117
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Heterocephalus glaber
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
    Orthologs
    human mouse all
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    Genomic context

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    See Casc3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624795.1 (3048800..3068432, complement)

    NW_004624795.1Genomic Context describing neighboring genes Neighboring gene WAS/WASL interacting protein family member 2 Neighboring gene uncharacterized LOC110344778 Neighboring gene Rap guanine nucleotide exchange factor like 1 Neighboring gene MSL complex subunit 1 Neighboring gene nuclear receptor subfamily 1 group D member 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004624795 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of exon-exon junction complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CASC3
    Names
    cancer susceptibility 3
    cancer susceptibility candidate 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HetGla_female_1.0 Primary Assembly

    Genomic

    1. NW_004624795.1 Reference HetGla_female_1.0 Primary Assembly

      Range
      3048800..3068432 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021240361.1 → XP_021096020.1  protein CASC3 isoform X2

      UniProtKB/TrEMBL
      G5BRV7
      Conserved Domains (1) summary
      smart01044
      Location:205 → 307
      Btz; CASC3/Barentsz eIF4AIII binding

    2. XM_004859453.3 → XP_004859510.1  protein CASC3 isoform X1

      UniProtKB/TrEMBL
      G5BRV7
      Related
      ENSHGLP00000016943.1, ENSHGLT00000017114.1
      Conserved Domains (1) summary
      smart01044
      Location:205 → 307
      Btz; CASC3/Barentsz eIF4AIII binding
    Nucleotide Protein
    Heading Accession and Version

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