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    Cnot2 CCR4-NOT transcription complex subunit 2 [ Heterocephalus glaber (naked mole-rat) ]

    Gene ID: 101722403, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Cnot2
    Gene description
    CCR4-NOT transcription complex subunit 2
    Locus tag
    GW7_18236
    See related
    Ensembl:ENSHGLG00000007294
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Heterocephalus glaber
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
    Orthologs
    human mouse all
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    Genomic context

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    See Cnot2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624750.1 (27433671..27529545, complement)

    NW_004624750.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type B Neighboring gene TBC1 domain family member 30 pseudogene Neighboring gene potassium calcium-activated channel subfamily M regulatory beta subunit 4 Neighboring gene uncharacterized LOC110349230 Neighboring gene uncharacterized LOC110349231 Neighboring gene E3 ubiquitin-protein ligase Mdm2 pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004624750 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of stem cell population maintenance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCR4-NOT core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CCR4-NOT transcription complex subunit 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HetGla_female_1.0 Primary Assembly

    Genomic

    1. NW_004624750.1 Reference HetGla_female_1.0 Primary Assembly

      Range
      27433671..27529545 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021258530.1 → XP_021114189.1  CCR4-NOT transcription complex subunit 2 isoform X2

      UniProtKB/TrEMBL
      G5BSZ0
      Conserved Domains (1) summary
      pfam04153
      Location:396 → 519
      NOT2_3_5; NOT2 / NOT3 / NOT5 family

    2. XM_004845049.3 → XP_004845106.1  CCR4-NOT transcription complex subunit 2 isoform X1

      UniProtKB/TrEMBL
      A0A0P6JDA5
      Related
      ENSHGLP00000010165.1, ENSHGLT00000010279.1
      Conserved Domains (1) summary
      pfam04153
      Location:406 → 529
      NOT2_3_5; NOT2 / NOT3 / NOT5 family

    3. XM_004845050.2 → XP_004845107.1  CCR4-NOT transcription complex subunit 2 isoform X2

      See identical proteins and their annotated locations for XP_004845107.1

      UniProtKB/TrEMBL
      G5BSZ0
      Conserved Domains (1) summary
      pfam04153
      Location:396 → 519
      NOT2_3_5; NOT2 / NOT3 / NOT5 family

    4. XM_021258529.1 → XP_021114188.1  CCR4-NOT transcription complex subunit 2 isoform X2

      UniProtKB/TrEMBL
      G5BSZ0
      Related
      ENSHGLP00000010166.1, ENSHGLT00000010280.1
      Conserved Domains (1) summary
      pfam04153
      Location:396 → 519
      NOT2_3_5; NOT2 / NOT3 / NOT5 family

    5. XM_004845051.3 → XP_004845108.1  CCR4-NOT transcription complex subunit 2 isoform X3

      Related
      ENSHGLP00000010167.1, ENSHGLT00000010281.1
      Conserved Domains (1) summary
      pfam04153
      Location:387 → 510
      NOT2_3_5; NOT2 / NOT3 / NOT5 family
    Nucleotide Protein
    Heading Accession and Version

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