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    LOC101397218 NKG2D ligand 2-like [ Ceratotherium simum simum (southern white rhinoceros) ]

    Gene ID: 101397218, updated on 2-Nov-2023

    Summary

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    Gene symbol
    LOC101397218
    Gene description
    NKG2D ligand 2-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ceratotherium simum simum (sub-species: simum)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Rhinocerotidae; Ceratotherium
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    Genomic context

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    See LOC101397218 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current CerSimSim1.0 (GCF_000283155.1) Unplaced Scaffold NW_004454272.1 (3470170..3472569, complement)

    NW_004454272.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106803800 Neighboring gene hdc homolog, cell cycle regulator Neighboring gene ABRA C-terminal like Neighboring gene NKG2D ligand 2-like Neighboring gene uncharacterized LOC106803802

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004454272.1 Unplaced Scaffold Reference CerSimSim1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in antigen processing and presentation of endogenous peptide antigen via MHC class Ib IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of T cell mediated cytotoxicity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NKG2D ligand 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ceratotherium simum simum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CerSimSim1.0 Primary Assembly

    Genomic

    1. NW_004454272.1 Reference CerSimSim1.0 Primary Assembly

      Range
      3470170..3472569 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014796510.1 → XP_014651996.1  NKG2D ligand 2-like

      Conserved Domains (1) summary
      cl08246
      Location:21 → 152
      MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    Nucleotide Protein
    Heading Accession and Version

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