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    CHMP6 charged multivesicular body protein 6 [ Trichechus manatus latirostris (Florida manatee) ]

    Gene ID: 101345360, updated on 8-Mar-2024

    Summary

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    Gene symbol
    CHMP6
    Gene description
    charged multivesicular body protein 6
    See related
    EnsemblRapid:ENSTMLG00000004605
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Trichechus manatus latirostris (sub-species: latirostris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
    Orthologs
    human mouse all
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    Genomic context

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    See CHMP6 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004443964.1 (1966067..1973552, complement)

    NW_004443964.1Genomic Context describing neighboring genes Neighboring gene apoptosis associated tyrosine kinase Neighboring gene BAR/IMD domain containing adaptor protein 2 Neighboring gene regulatory associated protein of MTOR complex 1 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene neuronal pentraxin 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004443964 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in late endosome to vacuole transport via multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle budding from membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESCRT III complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in multivesicular body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    charged multivesicular body protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TriManLat1.0 Primary Assembly

    Genomic

    1. NW_004443964.1 Reference TriManLat1.0 Primary Assembly

      Range
      1966067..1973552 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004374097.2 → XP_004374154.1  charged multivesicular body protein 6

      UniProtKB/TrEMBL
      A0A2Y9DGX6
      Related
      ENSTMLP00000006249.1, ENSTMLT00000006776.1
      Conserved Domains (1) summary
      pfam03357
      Location:18 → 177
      Snf7; Snf7
    Nucleotide Protein
    Heading Accession and Version

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