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    LOC101307389 transcription factor bHLH30 [ Fragaria vesca (wild strawberry) ]

    Gene ID: 101307389, updated on 11-Jan-2024

    Summary

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    Gene symbol
    LOC101307389
    Gene description
    transcription factor bHLH30
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Fragaria vesca
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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    Genomic context

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    See LOC101307389 in Genome Data Viewer
    Location:
    chromosome: LG4
    Exon count:
    3
    Annotation release Status Assembly LG Location
    101 current FraVesHawaii_1.0 (GCF_000184155.1) LG4 NC_020494.1 (16335664..16338026, complement)

    Linkage Group LG4 - NC_020494.1Genomic Context describing neighboring genes Neighboring gene leucoanthocyanidin reductase-like Neighboring gene uncharacterized LOC101307107 Neighboring gene protein ASPARTIC PROTEASE IN GUARD CELL 2 Neighboring gene transcription factor TCP18

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_020494.1 Chromosome LG4 Reference FraVesHawaii_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor bHLH30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Fragaria vesca Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference FraVesHawaii_1.0 Primary Assembly

    Genomic

    1. NC_020494.1 Reference FraVesHawaii_1.0 Primary Assembly

      Range
      16335664..16338026 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004297098.2 → XP_004297146.1  transcription factor bHLH30

      See identical proteins and their annotated locations for XP_004297146.1

      Conserved Domains (3) summary
      smart00353
      Location:172 → 211
      HLH; helix loop helix domain
      cl09141
      Location:245 → 316
      ACT; ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme
      cl19121
      Location:76 → 142
      ABBA-PTs; ABBA-type aromatic prenyltransferases (PTases)

    2. XM_011464641.1 → XP_011462943.1  transcription factor bHLH30

      See identical proteins and their annotated locations for XP_011462943.1

      Conserved Domains (3) summary
      smart00353
      Location:172 → 211
      HLH; helix loop helix domain
      cl09141
      Location:245 → 316
      ACT; ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme
      cl19121
      Location:76 → 142
      ABBA-PTs; ABBA-type aromatic prenyltransferases (PTases)
    Nucleotide Protein
    Heading Accession and Version

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