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    ALDH6B2 methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial [ Solanum lycopersicum (tomato) ]

    Gene ID: 101268723, updated on 1-Nov-2024

    Summary

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    Gene symbol
    ALDH6B2
    Gene description
    methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
    Also known as
    SlALDH6B2
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    Genomic context

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    See ALDH6B2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 1 NC_090800.1 (90094124..90100012, complement)
    103 previous assembly SL3.0 (GCF_000188115.4) 1 NC_015438.3 (93958997..93964704, complement)

    Chromosome 1 - NC_090800.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase PBL15 Neighboring gene gamma-glutamyl peptidase 5 Neighboring gene psbP domain-containing protein 1, chloroplastic Neighboring gene protein FLOURY 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-Wide Identification and Functional Classification of Tomato (Solanum lycopersicum) Aldehyde Dehydrogenase (ALDH) Gene Superfamily. Jimenez-Lopez JC, et al. PLoS One, 2016. PMID 27755582, Free PMC Article
    2. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables malonate-semialdehyde dehydrogenase (acetylating) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methylmalonate-semialdehyde dehydrogenase (acylating, NAD) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in thymine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in valine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial
    Names
    aldehyde dehydrogenase 6B2
    NP_001333575.1
    XP_069142800.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001346646.1 → NP_001333575.1  methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial

      Status: VALIDATED

      Source sequence(s)
      AK326507, DB688442
      UniProtKB/TrEMBL
      A0A3Q7FBR1

    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090800.1 Reference SLM_r2.1 Primary Assembly

      Range
      90094124..90100012 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_069286699.1 → XP_069142800.1  methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial isoform X1

    Nucleotide Protein
    Heading Accession and Version

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