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    LOC101266884 protein SODIUM POTASSIUM ROOT DEFECTIVE 2 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101266884, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC101266884
    Gene description
    protein SODIUM POTASSIUM ROOT DEFECTIVE 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 10 NC_015447.3 (65052275..65054967, complement)
    102 previous assembly SL2.50 (GCF_000188115.3) 10 NC_015447.2 (64929238..64931943, complement)

    Chromosome 10 - NC_015447.3Genomic Context describing neighboring genes Neighboring gene UDP-glycosyltransferase 73C3-like Neighboring gene UDP-glycosyltransferase 73C4 Neighboring gene UDP-glucuronic acid decarboxylase 1-like Neighboring gene transfer RNA arginine (anticodon UCG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SODIUM POTASSIUM ROOT DEFECTIVE 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015447.3 Reference SL3.0 Primary Assembly

      Range
      65052275..65054967 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004249590.4 → XP_004249638.1  protein SODIUM POTASSIUM ROOT DEFECTIVE 2

      UniProtKB/TrEMBL
      A0A3Q7JGY6
      Conserved Domains (1) summary
      cd00371
      Location:190 → 243
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    Nucleotide Protein
    Heading Accession and Version

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