U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC101266767 abscisic acid 8'-hydroxylase 4 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101266767, updated on 1-Nov-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC101266767
    Gene description
    abscisic acid 8'-hydroxylase 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC101266767 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 1 NC_090800.1 (91626266..91629938)
    103 previous assembly SL3.0 (GCF_000188115.4) 1 NC_015438.3 (95465096..95469263)

    Chromosome 1 - NC_090800.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101265871 Neighboring gene pentatricopeptide repeat-containing protein At2g15690, mitochondrial Neighboring gene calmodulin-like protein 30 Neighboring gene protein disulfide-isomerase SCO2 Neighboring gene uncharacterized LOC104645416 Neighboring gene ceramide synthase LOH2 Neighboring gene uncharacterized LOC109119826

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables (+)-abscisic acid 8'-hydroxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sterol metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    abscisic acid 8'-hydroxylase 4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090800.1 Reference SLM_r2.1 Primary Assembly

      Range
      91626266..91629938
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026028503.2 → XP_025884288.1  abscisic acid 8'-hydroxylase 4 isoform X5

      UniProtKB/TrEMBL
      A0A3Q7EU02
      Conserved Domains (1) summary
      cl12078
      Location:7 → 446
      p450; Cytochrome P450

    2. XM_026028494.2 → XP_025884279.1  abscisic acid 8'-hydroxylase 4 isoform X1

      UniProtKB/TrEMBL
      A0A3Q7EU02
      Conserved Domains (1) summary
      cl12078
      Location:7 → 490
      p450; Cytochrome P450

    3. XM_026028499.2 → XP_025884284.1  abscisic acid 8'-hydroxylase 4 isoform X3

      UniProtKB/TrEMBL
      A0A3Q7EU02
      Conserved Domains (1) summary
      cl12078
      Location:7 → 468
      p450; Cytochrome P450

    4. XM_069290299.1 → XP_069146400.1  abscisic acid 8'-hydroxylase 4 isoform X6

    5. XM_004230739.5 → XP_004230787.1  abscisic acid 8'-hydroxylase 4 isoform X2

      UniProtKB/TrEMBL
      A0A3Q7EU02
      Conserved Domains (1) summary
      cl12078
      Location:7 → 485
      p450; Cytochrome P450

    6. XM_004230740.5 → XP_004230788.1  abscisic acid 8'-hydroxylase 4 isoform X4

      UniProtKB/TrEMBL
      A0A3Q7EU02
      Conserved Domains (1) summary
      cl12078
      Location:7 → 463
      p450; Cytochrome P450
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases