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    LOC101266708 TPR repeat-containing thioredoxin TDX [ Solanum lycopersicum (tomato) ]

    Gene ID: 101266708, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC101266708
    Gene description
    TPR repeat-containing thioredoxin TDX
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101266708 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 3 NC_015440.3 (68918577..68922840)
    102 previous assembly SL2.50 (GCF_000188115.3) 3 NC_015440.2 (67434335..67438549)

    Chromosome 3 - NC_015440.3Genomic Context describing neighboring genes Neighboring gene probable serine/threonine protein kinase IREH1 Neighboring gene protein TIFY 6B Neighboring gene uncharacterized LOC104646564 Neighboring gene geranylgeranyl transferase type-2 subunit beta 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Hsp70 protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chaperone cofactor-dependent protein refolding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TPR repeat-containing thioredoxin TDX

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015440.3 Reference SL3.0 Primary Assembly

      Range
      68918577..68922840
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004235712.4 → XP_004235760.1  TPR repeat-containing thioredoxin TDX isoform X1

      UniProtKB/TrEMBL
      A0A3Q7FTZ8
      Conserved Domains (6) summary
      cd02947
      Location:294 → 383
      TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...
      cd14438
      Location:4 → 44
      Hip_N; N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins
      sd00006
      Location:102 → 130
      TPR; TPR repeat [structural motif]
      pfam06658
      Location:202 → 275
      DUF1168; Protein of unknown function (DUF1168)
      pfam13414
      Location:102 → 167
      TPR_11; TPR repeat
      pfam16017
      Location:32 → 116
      BTB_3; BTB/POZ domain

    2. XM_004235713.4 → XP_004235761.1  TPR repeat-containing thioredoxin TDX isoform X2

      Conserved Domains (5) summary
      cd02947
      Location:276 → 365
      TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...
      cd14438
      Location:4 → 44
      Hip_N; N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins
      sd00006
      Location:102 → 130
      TPR; TPR repeat [structural motif]
      pfam13414
      Location:102 → 167
      TPR_11; TPR repeat
      pfam16017
      Location:32 → 116
      BTB_3; BTB/POZ domain
    Nucleotide Protein
    Heading Accession and Version

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