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    LOC101263298 AP2/ERF and B3 domain-containing transcription factor At1g50680-like [ Solanum lycopersicum (tomato) ]

    Gene ID: 101263298, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101263298
    Gene description
    AP2/ERF and B3 domain-containing transcription factor At1g50680-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101263298 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 12 NC_090811.1 (68175478..68176686)
    103 previous assembly SL3.0 (GCF_000188115.4) 12 NC_015449.3 (66936902..66938110)

    Chromosome 12 - NC_090811.1Genomic Context describing neighboring genes Neighboring gene RPM1-interacting protein 4 Neighboring gene probable magnesium transporter NIPA2 Neighboring gene uncharacterized LOC138340751 Neighboring gene uncharacterized LOC101260029

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP2/ERF and B3 domain-containing transcription factor At1g50680-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090811.1 Reference SLM_r2.1 Primary Assembly

      Range
      68175478..68176686
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019211479.2 → XP_019067024.2  AP2/ERF and B3 domain-containing transcription factor At1g50680-like

      UniProtKB/TrEMBL
      A0A3Q7JYQ8
      Conserved Domains (1) summary
      pfam02362
      Location:38 → 127
      B3; B3 DNA binding domain
    Nucleotide Protein
    Heading Accession and Version

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