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    LOC101261668 probable magnesium transporter NIPA3 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101261668, updated on 2-Nov-2024

    Summary

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    Gene symbol
    LOC101261668
    Gene description
    probable magnesium transporter NIPA3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101261668 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 10 NC_090809.1 (25656201..25678854)
    103 previous assembly SL3.0 (GCF_000188115.4) 10 NC_015447.3 (27146671..27169332)

    Chromosome 10 - NC_015447.3Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene transcription factor MYB61-like Neighboring gene annexin-like protein RJ4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables magnesium ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in magnesium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable magnesium transporter NIPA3; probable magnesium transporter NIPA4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090809.1 Reference SLM_r2.1 Primary Assembly

      Range
      25656201..25678854
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004248797.5 → XP_004248845.1  probable magnesium transporter NIPA4 isoform X2

      See identical proteins and their annotated locations for XP_004248845.1

      UniProtKB/TrEMBL
      A0A3Q7IF38
      Conserved Domains (2) summary
      COG0697
      Location:64 → 139
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
      pfam05653
      Location:16 → 308
      Mg_trans_NIPA; Magnesium transporter NIPA

    2. XM_010329225.4 → XP_010327527.1  probable magnesium transporter NIPA4 isoform X2

      See identical proteins and their annotated locations for XP_010327527.1

      UniProtKB/TrEMBL
      A0A3Q7IF38
      Conserved Domains (2) summary
      COG0697
      Location:64 → 139
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
      pfam05653
      Location:16 → 308
      Mg_trans_NIPA; Magnesium transporter NIPA

    3. XM_026027687.2 → XP_025883472.1  probable magnesium transporter NIPA4 isoform X1

      Conserved Domains (1) summary
      pfam05653
      Location:16 → 308
      Mg_trans_NIPA; Magnesium transporter NIPA

    4. XM_026027688.2 → XP_025883473.1  probable magnesium transporter NIPA4 isoform X1

      Conserved Domains (1) summary
      pfam05653
      Location:16 → 308
      Mg_trans_NIPA; Magnesium transporter NIPA

    5. XM_069289739.1 → XP_069145840.1  probable magnesium transporter NIPA3 isoform X3

    RNA

    1. XR_011211859.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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