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    LOC101257965 mediator of RNA polymerase II transcription subunit 23 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101257965, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101257965
    Gene description
    mediator of RNA polymerase II transcription subunit 23
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101257965 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 5 NC_090804.1 (17724101..17773961, complement)
    103 previous assembly SL3.0 (GCF_000188115.4) 5 NC_015442.3 (16798887..16848447, complement)

    Chromosome 5 - NC_090804.1Genomic Context describing neighboring genes Neighboring gene casein kinase 1-like protein 2 Neighboring gene uncharacterized LOC138348681 Neighboring gene uncharacterized LOC138348682 Neighboring gene uncharacterized LOC138348683

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in positive regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mediator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit 23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090804.1 Reference SLM_r2.1 Primary Assembly

      Range
      17724101..17773961 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010322740.4 → XP_010321042.2  mediator of RNA polymerase II transcription subunit 23

    RNA

    1. XR_002027831.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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