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    LOC101256764 uncharacterized LOC101256764 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101256764, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101256764
    Gene description
    uncharacterized LOC101256764
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101256764 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 4 NC_090803.1 (1875708..1880587)
    103 previous assembly SL3.0 (GCF_000188115.4) 4 NC_015441.3 (1282923..1287851)

    Chromosome 4 - NC_090803.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC138347875 Neighboring gene WAT1-related protein At3g30340-like Neighboring gene sulfhydryl oxidase 2 Neighboring gene uncharacterized LOC109120004

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC101256764

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090803.1 Reference SLM_r2.1 Primary Assembly

      Range
      1875708..1880587
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019213250.3 → XP_019068795.1  uncharacterized protein LOC101256764 isoform X1

      UniProtKB/TrEMBL
      A0A3Q7FVP9
      Conserved Domains (3) summary
      smart00744
      Location:59 → 105
      RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
      cd16495
      Location:59 → 104
      RING_CH-C4HC3_MARCH; RING-CH finger (C4HC3-type) [structural motif]
      pfam12428
      Location:110 → 224
      DUF3675; Protein of unknown function (DUF3675)

    2. XM_069296913.1 → XP_069153014.1  uncharacterized protein LOC101256764 isoform X1

    3. XM_019213251.3 → XP_019068796.1  uncharacterized protein LOC101256764 isoform X2

    4. XM_004236942.5 → XP_004236990.1  uncharacterized protein LOC101256764 isoform X1

      See identical proteins and their annotated locations for XP_004236990.1

      UniProtKB/TrEMBL
      A0A3Q7FVP9
      Conserved Domains (3) summary
      smart00744
      Location:59 → 105
      RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
      cd16495
      Location:59 → 104
      RING_CH-C4HC3_MARCH; RING-CH finger (C4HC3-type) [structural motif]
      pfam12428
      Location:110 → 224
      DUF3675; Protein of unknown function (DUF3675)

    5. XM_069296914.1 → XP_069153015.1  uncharacterized protein LOC101256764 isoform X2

    6. XM_010321094.4 → XP_010319396.1  uncharacterized protein LOC101256764 isoform X1

      See identical proteins and their annotated locations for XP_010319396.1

      UniProtKB/TrEMBL
      A0A3Q7FVP9
      Conserved Domains (3) summary
      smart00744
      Location:59 → 105
      RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
      cd16495
      Location:59 → 104
      RING_CH-C4HC3_MARCH; RING-CH finger (C4HC3-type) [structural motif]
      pfam12428
      Location:110 → 224
      DUF3675; Protein of unknown function (DUF3675)
    Nucleotide Protein
    Heading Accession and Version

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