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    LOC101252824 disease resistance protein RPV1-like [ Solanum lycopersicum (tomato) ]

    Gene ID: 101252824, updated on 2-Nov-2024

    Summary

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    Gene symbol
    LOC101252824
    Gene description
    disease resistance protein RPV1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101252824 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 1 NC_090800.1 (87554064..87558931, complement)
    103 previous assembly SL3.0 (GCF_000188115.4) 1 NC_015438.3 (91430239..91435051, complement)

    Chromosome 1 - NC_090800.1Genomic Context describing neighboring genes Neighboring gene receptor-like protein kinase BRI1-like 3 Neighboring gene germin-like protein subfamily 1 member 14 Neighboring gene disease resistance protein RPV1-like Neighboring gene putative germin-like protein 2-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RPV1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090800.1 Reference SLM_r2.1 Primary Assembly

      Range
      87554064..87558931 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004230354.5 → XP_004230402.1  disease resistance protein RPV1-like isoform X1

      Conserved Domains (5) summary
      PLN03210
      Location:8 → 1007
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:679 → 700
      LRR_RI; leucine-rich repeat [structural motif]
      pfam01582
      Location:18 → 196
      TIR; TIR domain
      pfam12799
      Location:821 → 863
      LRR_4; Leucine Rich repeats (2 copies)
      cl21455
      Location:227 → 375
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. XM_069292839.1 → XP_069148940.1  disease resistance protein RPV1-like isoform X2

    Nucleotide Protein
    Heading Accession and Version

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