U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC101248944 NEDD8-activating enzyme E1 regulatory subunit AXR1 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101248944, updated on 9-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC101248944
    Gene description
    NEDD8-activating enzyme E1 regulatory subunit AXR1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC101248944 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 12 NC_015449.3 (499973..511948)
    102 previous assembly SL2.50 (GCF_000188115.3) 12 NC_015449.2 (499985..511931)

    Chromosome 12 - NC_015449.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112940449 Neighboring gene aconitate hydratase, cytoplasmic Neighboring gene probable beta-1,3-galactosyltransferase 2 Neighboring gene microRNA MIR171c

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NEDD8 activating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein neddylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    NEDD8-activating enzyme E1 regulatory subunit AXR1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015449.3 Reference SL3.0 Primary Assembly

      Range
      499973..511948
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004251470.4 → XP_004251518.1  NEDD8-activating enzyme E1 regulatory subunit AXR1 isoform X1

      Conserved Domains (2) summary
      cd01493
      Location:7 → 535
      APPBP1_RUB; Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to ...
      pfam00899
      Location:8 → 203
      ThiF; ThiF family

    2. XM_010315369.3 → XP_010313671.1  NEDD8-activating enzyme E1 regulatory subunit AXR1 isoform X2

      Conserved Domains (2) summary
      cd01493
      Location:7 → 521
      APPBP1_RUB; Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to ...
      pfam00899
      Location:8 → 203
      ThiF; ThiF family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases