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    LOC101248848 U-box domain-containing protein 5-like [ Solanum lycopersicum (tomato) ]

    Gene ID: 101248848, updated on 9-Nov-2023

    Summary

    Gene symbol
    LOC101248848
    Gene description
    U-box domain-containing protein 5-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

    See LOC101248848 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 3 NC_015440.3 (5759257..5763943, complement)
    102 previous assembly SL2.50 (GCF_000188115.3) 3 NC_015440.2 (5725088..5729740, complement)

    Chromosome 3 - NC_015440.3Genomic Context describing neighboring genes Neighboring gene transcription factor BEE 2 Neighboring gene U-box domain-containing protein 5-like Neighboring gene late embryogenesis abundant protein ECP63-like Neighboring gene uncharacterized LOC109119810 Neighboring gene protein AE7-like 1

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    U-box domain-containing protein 5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015440.3 Reference SL3.0 Primary Assembly

      Range
      5759257..5763943 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010319406.2XP_010317708.1  U-box domain-containing protein 5-like isoform X1

      UniProtKB/TrEMBL
      A0A3Q7FFX9
      Conserved Domains (2) summary
      smart00504
      Location:263326
      Ubox; Modified RING finger domain
      sd00043
      Location:528562
      ARM; armadillo repeat [structural motif]
    2. XM_010319405.3XP_010317707.1  U-box domain-containing protein 5-like isoform X1

      UniProtKB/TrEMBL
      A0A3Q7FFX9
      Conserved Domains (2) summary
      smart00504
      Location:263326
      Ubox; Modified RING finger domain
      sd00043
      Location:528562
      ARM; armadillo repeat [structural motif]
    3. XM_004234509.4XP_004234557.2  U-box domain-containing protein 5-like isoform X2

      UniProtKB/TrEMBL
      A0A3Q7FFX9
      Conserved Domains (2) summary
      smart00504
      Location:155218
      Ubox; Modified RING finger domain
      sd00043
      Location:420454
      ARM; armadillo repeat [structural motif]