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    LOC101248047 beta-glucosidase 11 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101248047, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101248047
    Gene description
    beta-glucosidase 11
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101248047 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 9 NC_090808.1 (64202286..64207459, complement)
    103 previous assembly SL3.0 (GCF_000188115.4) 9 NC_015446.3 (67310722..67315860, complement)

    Chromosome 9 - NC_090808.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109121171 Neighboring gene beta-glucosidase 11-like Neighboring gene phytochrome A-associated F-box protein Neighboring gene serine/arginine-rich-splicing factor SR34

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-glucosidase 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090808.1 Reference SLM_r2.1 Primary Assembly

      Range
      64202286..64207459 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004247375.5 → XP_004247423.1  beta-glucosidase 11 isoform X1

      UniProtKB/TrEMBL
      K4CV84
      Conserved Domains (1) summary
      cl23725
      Location:5 → 520
      Glyco_hydro_1; Glycosyl hydrolase family 1

    2. XM_019215808.3 → XP_019071353.1  beta-glucosidase 11 isoform X3

    3. XM_026032928.2 → XP_025888713.1  beta-glucosidase 11 isoform X2

      Conserved Domains (1) summary
      cl23725
      Location:67 → 491
      Glyco_hydro_1; Glycosyl hydrolase family 1

    4. XM_026032929.2 → XP_025888714.1  beta-glucosidase 11 isoform X4

      Conserved Domains (1) summary
      cl23725
      Location:1 → 419
      Glyco_hydro_1; Glycosyl hydrolase family 1
    Nucleotide Protein
    Heading Accession and Version

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