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    LOC101246611 dof zinc finger protein DOF3.1 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101246611, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC101246611
    Gene description
    dof zinc finger protein DOF3.1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101246611 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 3 NC_015440.3 (70989595..70991412, complement)
    102 previous assembly SL2.50 (GCF_000188115.3) 3 NC_015440.2 (69504807..69507099, complement)

    Chromosome 3 - NC_015440.3Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S15a-5 Neighboring gene protein piccolo Neighboring gene serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B Neighboring gene inorganic pyrophosphatase 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dof zinc finger protein DOF3.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015440.3 Reference SL3.0 Primary Assembly

      Range
      70989595..70991412 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004235567.4 → XP_004235615.1  dof zinc finger protein DOF3.1

      UniProtKB/TrEMBL
      A0A3Q7FVZ1
      Conserved Domains (1) summary
      pfam02701
      Location:19 → 68
      zf-Dof; Dof domain, zinc finger
    Nucleotide Protein
    Heading Accession and Version

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