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    LOC101246183 cullin-1 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101246183, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC101246183
    Gene description
    cullin-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 1 NC_015438.3 (89446522..89452880, complement)
    102 previous assembly SL2.50 (GCF_000188115.3) 1 NC_015438.2 (89569522..89575409, complement)

    Chromosome 1 - NC_015438.3Genomic Context describing neighboring genes Neighboring gene chaperone protein dnaJ C76, chloroplastic Neighboring gene probable microtubule-binding protein TANGLED Neighboring gene sucrose nonfermenting 4-like protein Neighboring gene protein MICRORCHIDIA 6-like Neighboring gene cyclin-H1-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cullin-RING ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cullin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015438.3 Reference SL3.0 Primary Assembly

      Range
      89446522..89452880 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019211399.2 → XP_019066944.1  cullin-1 isoform X3

    2. XM_019211394.2 → XP_019066939.1  cullin-1 isoform X1

    3. XM_004230164.4 → XP_004230212.1  cullin-1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q7EN39
      Conserved Domains (1) summary
      pfam00888
      Location:12 → 283
      Cullin; Cullin family

    RNA

    1. XR_738420.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases