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    LOC101244838 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' [ Solanum lycopersicum (tomato) ]

    Gene ID: 101244838, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101244838
    Gene description
    serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B'
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101244838 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 12 NC_090811.1 (1740913..1745972, complement)
    103 previous assembly SL3.0 (GCF_000188115.4) 12 NC_015449.3 (1338598..1343419, complement)

    Chromosome 12 - NC_090811.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101244344 Neighboring gene uncharacterized LOC104644828 Neighboring gene palmitoyl-acyl carrier protein thioesterase, chloroplastic Neighboring gene E3 ubiquitin-protein ligase-like protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein phosphatase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of protein phosphatase type 2A complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090811.1 Reference SLM_r2.1 Primary Assembly

      Range
      1740913..1745972 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010315410.4 → XP_010313712.2  serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like

    2. XM_004251542.5 → XP_004251590.2  serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like

    3. XM_010315411.4 → XP_010313713.2  serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like

    4. XM_026028820.2 → XP_025884605.2  serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like

    Nucleotide Protein
    Heading Accession and Version

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