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    LOC101220778 calcium homeostasis endoplasmic reticulum protein [ Cucumis sativus (cucumber) ]

    Gene ID: 101220778, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101220778
    Gene description
    calcium homeostasis endoplasmic reticulum protein
    Locus tag
    Csa_005819
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101220778 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 5 NC_026659.2 (6358179..6362870)
    101 previous assembly ASM407v2 (GCF_000004075.2) 5 NC_026659.1 (9504549..9509126)

    Chromosome 5 - NC_026659.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116403810 Neighboring gene uncharacterized LOC116404144 Neighboring gene 40S ribosomal protein S4-3 Neighboring gene ferritin-3, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular calcium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium homeostasis endoplasmic reticulum protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026659.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      6358179..6362870
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004148125.3 → XP_004148173.1  calcium homeostasis endoplasmic reticulum protein

      See identical proteins and their annotated locations for XP_004148173.1

      UniProtKB/TrEMBL
      A0A0A0KSG0
      Conserved Domains (3) summary
      smart00648
      Location:133 → 182
      SWAP; Suppressor-of-White-APricot splicing regulator
      PHA03378
      Location:446 → 574
      PHA03378; EBNA-3B; Provisional
      pfam04818
      Location:328 → 397
      CTD_bind; RNA polymerase II-binding domain
    Nucleotide Protein
    Heading Accession and Version

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