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    LOC101217544 60S ribosomal protein L8 [ Cucumis sativus (cucumber) ]

    Gene ID: 101217544, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101217544
    Gene description
    60S ribosomal protein L8
    Locus tag
    Csa_011442
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101217544 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (20176301..20178413)
    101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (19527986..19530044)

    Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116402434 Neighboring gene uncharacterized LOC116402617 Neighboring gene organelle RRM domain-containing protein 2, mitochondrial Neighboring gene organic cation/carnitine transporter 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. Li Z, et al. BMC Genomics, 2011 Nov 2. PMID 22047402, Free PMC Article
    2. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. Guo S, et al. BMC Genomics, 2010 Jun 17. PMID 20565788, Free PMC Article
    3. The genome of the cucumber, Cucumis sativus L. Huang S, et al. Nat Genet, 2009 Dec. PMID 19881527
    4. An integrated genetic and cytogenetic map of the cucumber genome. Ren Y, et al. PLoS One, 2009 Jun 4. PMID 19495411, Free PMC Article
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    60S ribosomal protein L8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      20176301..20178413
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004151922.3 → XP_004151970.1  60S ribosomal protein L8

      See identical proteins and their annotated locations for XP_004151970.1

      UniProtKB/TrEMBL
      A0A0A0L7L1
      Conserved Domains (1) summary
      PTZ00180
      Location:1 → 248
      PTZ00180; 60S ribosomal protein L8; Provisional
    Nucleotide Protein
    Heading Accession and Version

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