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    LOC101217451 actin-depolymerizing factor 5 [ Cucumis sativus (cucumber) ]

    Gene ID: 101217451, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101217451
    Gene description
    actin-depolymerizing factor 5
    Locus tag
    Csa_005919
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101217451 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 2 NC_026656.2 (13255342..13256485)
    101 previous assembly ASM407v2 (GCF_000004075.2) 2 NC_026656.1 (12880386..12881152)

    Chromosome 2 - NC_026656.2Genomic Context describing neighboring genes Neighboring gene protein HIGH ARSENIC CONTENT 1, mitochondrial Neighboring gene CTL-like protein DDB_G0288717 Neighboring gene subtilisin-like protease SBT1.6 Neighboring gene putative CCR4-associated factor 1 homolog 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament bundle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in actin filament depolymerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    actin-depolymerizing factor 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026656.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      13255342..13256485
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004146987.3 → XP_004147035.1  actin-depolymerizing factor 5

      See identical proteins and their annotated locations for XP_004147035.1

      UniProtKB/TrEMBL
      A0A0A0LLM1
      Conserved Domains (1) summary
      PLN03216
      Location:3 → 143
      PLN03216; actin depolymerizing factor; Provisional
    Nucleotide Protein
    Heading Accession and Version

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