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    LOC101217092 RNA cytidine acetyltransferase 1 [ Cucumis sativus (cucumber) ]

    Gene ID: 101217092, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101217092
    Gene description
    RNA cytidine acetyltransferase 1
    Locus tag
    Csa_007578
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101217092 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 1 NC_026655.2 (24954569..24959968, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 1 NC_026655.1 (21469580..21473571, complement)

    Chromosome 1 - NC_026655.2Genomic Context describing neighboring genes Neighboring gene sec-independent protein translocase protein TATA, chloroplastic Neighboring gene transcription factor UNE12 Neighboring gene kinesin-like protein KIN-14U Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables rRNA cytidine N-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA acetylation involved in maturation of SSU-rRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA cytidine acetyltransferase 1
    Names
    UPF0202 protein At1g10490

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026655.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      24954569..24959968 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031881024.1 → XP_031736884.1  RNA cytidine acetyltransferase 1 isoform X1

      Conserved Domains (3) summary
      pfam05127
      Location:2 → 27
      Helicase_RecD
      pfam13718
      Location:67 → 295
      GNAT_acetyltr_2; GNAT acetyltransferase 2
      pfam13725
      Location:312 → 491
      tRNA_bind_2; Possible tRNA binding domain

    2. XM_004135608.3 → XP_004135656.1  RNA cytidine acetyltransferase 1 isoform X1

      Conserved Domains (3) summary
      pfam05127
      Location:2 → 27
      Helicase_RecD
      pfam13718
      Location:67 → 295
      GNAT_acetyltr_2; GNAT acetyltransferase 2
      pfam13725
      Location:312 → 491
      tRNA_bind_2; Possible tRNA binding domain

    3. XM_011661635.2 → XP_011659937.1  RNA cytidine acetyltransferase 1 isoform X2

      See identical proteins and their annotated locations for XP_011659937.1

      UniProtKB/TrEMBL
      A0A0A0M1P0
      Conserved Domains (4) summary
      COG1444
      Location:2 → 448
      TmcA; tRNA(Met) C34 N-acetyltransferase TmcA [Translation, ribosomal structure and biogenesis]
      pfam13718
      Location:67 → 283
      GNAT_acetyltr_2; GNAT acetyltransferase 2
      pfam13725
      Location:318 → 422
      tRNA_bind_2; Possible tRNA binding domain
      cl21455
      Location:2 → 27
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    4. XM_031881032.1 → XP_031736892.1  RNA cytidine acetyltransferase 1 isoform X4

      Conserved Domains (2) summary
      pfam13718
      Location:1 → 217
      GNAT_acetyltr_2; GNAT acetyltransferase 2
      pfam13725
      Location:234 → 413
      tRNA_bind_2; Possible tRNA binding domain

    5. XM_031881028.1 → XP_031736888.1  RNA cytidine acetyltransferase 1 isoform X3

      Conserved Domains (2) summary
      pfam13718
      Location:1 → 228
      GNAT_acetyltr_2; GNAT acetyltransferase 2
      pfam13725
      Location:245 → 424
      tRNA_bind_2; Possible tRNA binding domain
    Nucleotide Protein
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